Details for MX000068

General Information

MX000068

SigE (37-mer)

BSU15320

Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome.

(-35 region)-N14-(-10 region)

NCBI GenBank BacDive

Frequency Matrix

A 7 5 9 3 1 5 12 1 13 4 4 2 4 2 3 5 3 7 5 5 3 4 6 3 5 4 15 0 16 4 10 7 2 3 7 6 11
T 6 4 4 2 9 3 0 13 2 7 10 9 2 4 5 4 7 3 2 5 6 5 2 4 4 0 0 16 0 3 1 4 13 5 6 6 3
G 1 2 1 8 6 0 0 0 1 1 0 1 5 2 2 1 4 3 4 1 0 3 4 4 6 0 0 0 0 3 4 1 0 7 3 1 0
C 2 5 2 3 0 8 4 2 0 4 2 4 5 8 6 6 2 3 5 5 7 4 4 5 1 12 1 0 0 6 1 4 1 1 0 3 2
Consensus W N W N K M M T A N W Y N N N N N N N N Y N N N N M A T A N R N T N W N M

Sequence Logo

Motif List

Motif AccMotif NameBinding SequenceStartEndOrientationPubMed-ID
MF097937 spoIID operon
agagTCATATTagcttgtccctgccCATAGACTagactagagt
3777781 3777823 - 1729246
MF097938 usd-spoIIID operon
tttaGCATATTcccaaaagaatgctaATACACTgttacaaacc
3748858 3748900 - 1729246
MF097939 spoIVFAB operon
aaccGAATATTtgccatggacaagaCATATGATgtacaaaccc
2857650 2857692 - 1729246
MF097941 cotE operon
taagTAAagTTtctaggcacccctgCATACAaTggaacagaaa
1774933 1774975 + 1729246
MF097942 cotE operon
aaatGCAcAcTagacaaatgcccagCATAagaTaacacgaaga
1775003 1775045 + 1729246
MF097943 spoIVCB operon
acagaCAcAgacagcctcccggtcaCATACAtttacatatagg
2652919 2652961 + 1729246
MF097944 glgBCDAP operon
cttcGAATAaatactataaatgaaaacTAtgaTgtcagaaa
3171657 3171697 - 1729246
MF097947 bofA operon
agtggtCTAAACtcctggatcttctCATAAGCTtgtactag
29705 29745 + 1729246
MF097951 spoIIP operon
acagttCTACTTcctctagcttgttCATAGAGTaattactagac
2634461 2634504 - 8990290
MF097952 cotJ operon
ttagtcATAaTCatgcctcctgcctCATAcCtAttaaggtcatt
755839 755882 + 8990290
MF097955 spoVD operon
atcgttCTACCTgtccaaattcaggCATAAAATgaaacaagcct
1584149 1584192 + 8990290
MF097957 spoVM operon
gaggtaCTTTTTcgtttgcaaaaggCATATTAAtaatgataaga
1655319 1655362 + 8990290
MF097958 spoVID operon
ccactcATATTTtctccagttcataCATACACCtttagtgacat
2872786 2872829 - 8990290
MF097959 exuP2 operon
taaagaATATTTaaaataatttgtaAATAAAATgtgtttgtagg
1303329 1303372 + 8990290
MF097961 yteV operon
tctatcATAACGctgttccaaacggAATAGATTgatagagaaag
3078589 3078632 - 8990290
MF097962 mmgABCDE operon
tcatTCATTCATgcccgtttcaaagCATACATTcatagaagac
2514089 2514131 - 8759838