Details for MX000210

General Information

MX000210

NtcA

Synpcc7942_0127

Synechococcus elongatus PCC 7942 chromosome, complete genome.

NCBI

Frequency Matrix

A 0 0 11 4 2 6 5 3 3 3 3 3 8 1
T 0 11 0 2 3 1 3 3 5 1 1 7 1 0
G 11 0 0 4 1 2 2 0 2 6 1 0 1 2
C 0 0 0 1 5 2 1 5 1 1 6 1 1 8
Consensus G T A N N N N H N R M W M M

Sequence Logo

Motif List

Motif AccMotif NameBinding SequenceStartEndOrientationPubMed-ID
MF099783 NtcA operon
GTAGCAGTTGCTAC
126234 126247 + 10217756
MF099784 nirA operon
gtagtttctgttac
1264867 1264880 - 10217756
MF099785 nirA operon
gtatcaatgattac
1264936 1264949 - 9696753
MF099786 nirA operon
GTAGCAATTGCTAC
1265007 1265020 - 9696753
MF099787 NblA operon
GTAGCACCCGTAGC
2206991 2207004 + 11532155
MF099788 NblA operon
GTAAACAATCACTAC
2207023 2207037 + 11532155
MF099789 NblA operon
GTATTGACGGCTCG
2207060 2207073 + 11532155
MF099790 GlnB operon
gtagcagtaactac
318574 318587 - 10217756
MF099792 gltX operon
GTATCATAAAATAG
2467554 2467567 + 12421319
MF099793 gltX operon
GTTGATGACTTTAC
2467617 2467630 + 12421319
MF099794 gltX operon
GTACGATCGAGAAC
2467650 2467663 + 12421319