Details for MX000266

General Information

MX000266

CsgD

JW1023

Escherichia coli str. K-12 substr. W3110, complete genome.

imported from the CollecTF database

NCBI

Frequency Matrix

A 12 14 15 10 3 3 2 7 6 12 10 13 5 10
T 3 2 2 4 2 7 2 5 8 4 2 1 11 6
G 2 2 0 2 13 5 13 2 3 2 3 1 1 0
C 1 0 1 2 0 3 1 4 1 0 3 3 1 2
Consensus A A A A G T G A T A A A T A

Sequence Logo

Motif List

Motif AccMotif NameBinding SequenceStartEndOrientationPubMed-ID
MF103246 Y75_p3514 operon
AGAAGTGCCAGACT
3800300 3800313 + 21421764
MF103247 Y75_p3513 operon
AAAAGTGGAATATA
3800315 3800328 - 21421764
MF103248 Y75_p1009 operon
TAATGGATTACATC
1103570 1103583 + 21421764
MF103249 Y75_p1009 operon
AAATGGGTAAAATA
1103550 1103563 + 21421764
MF103250 Y75_p1009 operon
AAAAGTTGTACATT
1103697 1103710 + 21421764
MF103251 Y75_p1009 operon
AATGGTGATAACTT
1103745 1103758 + 21421764
MF103252 Y75_p0374 operon
TAACGGGTGAGCTA
402839 402852 + 21421764
MF103253 Y75_p1907 operon
AAAGGCGCTAAATA
2015206 2015219 + 21421764
MF103254 Y75_p1907 operon
GTAAGTCAATAAGA
2015191 2015204 + 21421764
MF103255 Y75_p1009 operon
AAAAAAGAAAAATA
1104036 1104049 + 21421764
MF103256 Y75_p1009 operon
CAAAGTATTAAAAC
1104013 1104026 - 21421764
MF103257 Y75_p1009 operon
AAATATTTTTAATA
1104066 1104079 - 21421764
MF103258 Y75_p0936 operon
TAATACGAATGAAT
1028295 1028308 - 21421764
MF103259 Y75_p3079 operon
AACAGGGAGTAAAA
3301135 3301148 - 21421764
MF103260 Y75_p3079 operon
GATATGGCAAAATA
3301162 3301175 - 21421764
MF103261 Y75_p0977 operon
AAACGCGATGAGAT
1068288 1068301 - 21421764
MF103262 Y75_p0978 operon
ATAAGAGCGGCTTA
1068310 1068323 + 21421764
MF103263 Y75_p0977 operon
AGAATAGATATCAT
1068340 1068353 - 21421764