Details for MX000288

General Information

MX000288

VqsM

PA2227

Pseudomonas aeruginosa PAO1 chromosome, complete genome.

imported from the CollecTF database

NCBI GenBank BacDive

Frequency Matrix

A 0 0 29 0 7 12 3 8 3 1 2 0 9 0 33
T 9 0 11 23 4 17 15 14 32 4 0 1 2 0 5
G 25 39 0 8 8 9 8 5 0 1 36 38 0 3 1
C 6 1 0 9 21 2 14 13 5 34 2 1 29 37 1
Consensus G G A T C T T T T C G G C C A

Sequence Logo

Motif List

Motif AccMotif NameBinding SequenceStartEndOrientationPubMed-ID
MF103484 PA0439 operon
GGTGCTGATCGGCCA
494372 494386 - 25034696
MF103485 pyrB operon
GGATCAGCTCGGCCA
444363 444377 + 25034696
MF103486 hemF operon
TCTCCACCTCGGCCA
24389 24403 + 25034696
MF103487 nfxB operon
TGATCTTTTGACAGC
5155475 5155489 + 25034696
MF103488 PA2229 operon
GGATATTTTCGGACA
2451243 2451257 + 25034696
MF103489 lasI operon
TGATCTTTTCGGACG
1559128 1559142 + 25034696
MF103490 exsA operon
TGATTTTCAAAGCCA
1857180 1857194 - 25034696
MF103491 PA0846 operon
GGTGAGCGCCGGCCA
923943 923957 + 25034696
MF103492 norB operon
CGAGGTCTTCGGCGA
584704 584718 - 25034696
MF103493 norB operon
GGTTCAGCTCGGCCT
584161 584175 - 25034696
MF103494 PA1254 operon
GGATCGCGTCGGCCA
1361678 1361692 + 25034696
MF103495 PA1283 operon
GGTGAGTTTCGGCCT
1392418 1392432 + 25034696
MF103496 PA2006 operon
CGATCTTCTTGTACA
2192600 2192614 + 25034696
MF103497 PA2226 operon
TGATAGGATTGGCGT
2449332 2449346 - 25034696
MF103498 PA2229 operon
GGATATTTTCGGACA
2451243 2451257 + 25034696
MF103499 fpvR operon
CGATCTCCTCGGCCA
2638586 2638600 + 25034696
MF103500 PA2588 operon
GGTTTTCCTTGGCCA
2928190 2928204 + 25034696
MF103501 serS operon
TGATCTTCCCGGCCA
2953069 2953083 - 25034696
MF103502 PA3106 operon
CGAGCACCTCGGCCA
3486947 3486961 + 25034696
MF103503 PA3209 operon
GGATCGCCACGGCCA
3599372 3599386 - 25034696
MF103504 PA3343 operon
GGACAAAATCGGCCA
3753743 3753757 + 25034696
MF103505 nosZ operon
CGTCGAGTTCGGTCA
3799220 3799234 - 25034696
MF103506 gloA1 operon
GGATGCGATCGGACA
3929540 3929554 + 25034696
MF103507 PA3566 operon
TGTCCACGTCCGCCA
3996764 3996778 + 25034696
MF103508 map operon
GGATCGATTCGGCCA
4074158 4074172 + 25034696
MF103509 PA3669 operon
GGACTTCTTCGGCCA
4108967 4108981 - 25034696
MF103510 ffh operon
GGATGGTTATGGCCA
4201186 4201200 - 25034696
MF103511 PA3924 operon
TGACGATATCGGACA
4400124 4400138 - 25034696
MF103512 PA4288 operon
GGACTTCGCCGGCCA
4801428 4801442 + 25034696
MF103513 phuR operon
GGATCATTTCCGCCT
5286889 5286903 + 25034696
MF103514 PA4767 operon
GGTGAATTTCGGACA
5353702 5353716 - 25034696
MF103515 purH operon
GGATCTTCTCGGCCA
5451961 5451975 - 25034696
MF103516 waaG operon
GGTGGATACCGGCCT
5630066 5630080 - 25034696
MF103517 PA5219 operon
GGATGCCGTCGGCCA
5869671 5869685 + 25034696
MF103518 gcvT1 operon
GGACCTGATCGGCCA
5873546 5873560 - 25034696
MF103519 PA5244 operon
GGATCGTTTCGGCCA
5904491 5904505 + 25034696
MF103520 glnK operon
GGATCGCCCCGGACA
5953896 5953910 - 25034696
MF103521 PA5325 operon
CGACCACCTCGGCCA
5995730 5995744 + 25034696
MF103522 PA5422 operon
TGATGTATTCGGCCA
6104503 6104517 - 25034696
MF103523 PA5517 operon
GGTGCTGATCGGTCA
6210486 6210500 - 25034696