Virtual Footprint

Virtual Footprint is a tool for recognizing DNA patterns in prokaryotic genomes. Genomes can be provided by Genbank files which allows the positional mapping to genes on the genome.

Search with Virtual Footprint

Sequence from...

...GenBank file:

...FASTA file:

Select PWM:

Examples: D. shibae with Fnr (MX000004), C. difficile with SigG (MX000296)

Genbank Options

Show only intergenic hits

Hide hits without genomic context

Upstream distance to ATG: bp

Notification

Email adress:

Virtual Footprint analysis may take a while. Get an email, when your job has been processed.